from pymol import cmd import os if not ('pept' in cmd.get_names()): cmd.delete('all') util.ray_shadows('heavy') cmd.do('load $PYMOL_PATH/test/dat/pept.pdb') cmd.do('set surface_quality=1') cmd.do('show surface;hide lines;') cmd.zoom('all',10) cmd.do('clip far,-40;show surface;hide lines;set smooth_color=1') cmd.viewport(300,300) pov = cmd.get_povray() f=open("tmp_pymol.pov",'w') f.write(pov[0]) f.write("#include \"colors.inc\"\n"); f.write("#include \"stones.inc\"\n"); f.write("#include \"woods.inc\"\n"); f.write(pov[1]) f.write("plane {<0,1,0.5>, -70 texture{T_Grnt10 scale 40}}\n"); f.write("sphere {<14,4,-132>, 7.0 pigment{color Grey} finish{reflection 1.0 metallic}}\n"); for x in xrange(-30,30,5): f.write("sphere {<%6.4f,-12,-100>, 2.0 texture{P_WoodGrain1B scale 8}}\n"%(x)) f.write("box {<-17,17,-120>,<13,15,-160> pigment {color Red}}\n") f.close() cmd.refresh() os.system("x-povray +Itmp_pymol.pov +Otmp_pymol.png +W300 +H300 +A") cmd.load_png('tmp_pymol.png')