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A* -------------------------------------------------------------------
B* This file contains source code for the PyMOL computer program
C* copyright 1998-2006 by Warren Lyford Delano of DeLano Scientific. 
D* -------------------------------------------------------------------
E* It is unlawful to modify or remove this copyright notice.
F* -------------------------------------------------------------------
G* Please see the accompanying LICENSE file for further information. 
H* -------------------------------------------------------------------
I* Additional authors of this source file include:
Z* -------------------------------------------------------------------
#ifndef _H_ObjectAlignment
#define _H_ObjectAlignment



typedef struct ObjectAlignmentState {
  CObjectState state;
  int *alignVLA;
  WordType guide; 
  /* not stored */
  int valid;
  OVOneToAny *id2tag;
  CGO *std;
  CGO *ray;
} ObjectAlignmentState;

typedef struct ObjectAlignment {
  CObject Obj;
  ObjectAlignmentState *State;
  int NState;
  int SelectionState,ForceState;
} ObjectAlignment;

void ObjectAlignmentUpdate(ObjectAlignment *I);

ObjectAlignment *ObjectAlignmentDefine(PyMOLGlobals *G,
                                       ObjectAlignment *obj,
                                       int *align_vla,
                                       int state, 
                                       int merge,
                                       ObjectMolecule *guide,
                                       ObjectMolecule *flush);

void ObjectAlignmentRecomputeExtent(ObjectAlignment *I);

PyObject *ObjectAlignmentAsPyList(ObjectAlignment *I);

int ObjectAlignmentNewFromPyList(PyMOLGlobals *G,PyObject *list,
                                 ObjectAlignment **result,int version);

int ObjectAlignmentAsStrVLA(PyMOLGlobals *G,ObjectAlignment *I, int state,int format, char **str_vla);


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