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Sourcecode: pymol version File versions

B02.py

# 
# basic run through the PDB with ray-tracing
#
        
from glob import glob

import threading
import time
from pymol import cmd
import sys, os, os.path
import random
import traceback

ent_dir = "pdb"


def load():
    r = 0
    rep = [ "lines","sticks","spheres","dots","ribbon","cartoon" ]
    list = glob("pdb/*/*")
    list = map(lambda x:(random.random(),x),list)
    list.sort() 
    list = map(lambda x:x[1],list)
#    list = [ "pdb/rb/pdb0rbs.noc" ] + list
#    while list[0]!="pdb/f8/pdb1f8u":
#        list.pop(0)
    for file in list:
        try:
            print file                     
            cmd.delete('pdb')              
            cmd.load(file,'pdb')           
            cmd.orient('pdb')              
            cmd.color('red','ss h')        
            cmd.color('yellow','ss s')     
            cmd.hide()                     
            if cmd.count_atoms()<15000:    
                cmd.show(rep[r],"all")     
            elif cmd.count_atoms()<50000:  
                cmd.show("cartoon","all")  
            else:                          
                cmd.show("lines","all")      
                                           
            r = r + 1                      
            if r>=len(rep): r=0;           
            sys.__stderr__.write(".")      
            sys.__stderr__.flush()         
            n = cmd.count_states()         
            cmd.ray(160,120)               
            cmd.dirty()                    
            time.sleep(0.1)                
            if n>1:                        
                sys.__stderr__.write("\n") 
                sys.__stderr__.flush()     
        except:
            traceback.print_exc()

try:
    load()
except:
    traceback.print_exc()




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