# -c from pymol import cmd print "BEGIN-LOG" cmd.do(""" load dat/pept.pdb show sticks,pept set ray_default_renderer=2 ray dele all """) cmd.do( ['load dat/il2.pdb', 'show dots,il2', 'ray', 'dele all' ]) cmd.do('load dat/3al1.pdb\nshow sph,3al1\nray\ndele all') cmd.do('fragment arg') cmd.do('ray') # see if when can embed Python blocks inside of PyMOL inside of Python cmd.do('for a in range(1,10):\\\n print a\\\n print a+10') cmd.do(r""" for a in range(11,21):\ print a\ print a+10 """) print "END-LOG"