/* A* ------------------------------------------------------------------- B* This file contains source code for the PyMOL computer program C* Copyright (c) Schrodinger, LLC. D* ------------------------------------------------------------------- E* It is unlawful to modify or remove this copyright notice. F* ------------------------------------------------------------------- G* Please see the accompanying LICENSE file for further information. H* ------------------------------------------------------------------- I* Additional authors of this source file include: -* -* -* Z* ------------------------------------------------------------------- */ #ifndef _H_Match #define _H_Match #include "PyMOLGlobals.h" 00024 typedef struct { PyMOLGlobals *G; float **smat; float **mat; float **da, **db; int na, nb; int *pair; float score; /* result */ int n_pair; } CMatch; CMatch *MatchNew(PyMOLGlobals * G, unsigned int na, unsigned int nb, int dist_mats); int MatchResidueToCode(CMatch * I, int *vla, int n); int MatchMatrixFromFile(CMatch * I, char *fname, int quiet); int MatchPreScore(CMatch * I, int *vla1, int n1, int *vla2, int n2, int quiet); void MatchFree(CMatch * I); int MatchAlign(CMatch * I, float gap_penalty, float ext_penalty, int max_gap, int max_skip, int quiet, int window, float ante); #endif